PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC8431_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 94aa    MW: 10660.8 Da    PI: 9.3621
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC8431_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.91.6e-0719601454
                HHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH 14 driNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                d+i + +++Lr+ +P+ + + +s  +s + +L+++++YI++L
  RrC8431_p1 19 DQITDLISKLRQSIPEiRQNRRSNTVSASKVLQETCNYIRNL 60
                799*************9977777779999***********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.29560IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-81985IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-81963IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-51960IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005773Cellular Componentvacuole
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MSSSRRSRQS SSSSRINDDQ ITDLISKLRQ SIPEIRQNRR SNTVSASKVL QETCNYIRNL  60
NKEADDLSDR LSQLLETIDP NSPQAAVIRS LINE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009131445.11e-48PREDICTED: transcription factor PRE2-like
RefseqXP_013627243.11e-48PREDICTED: transcription factor PRE2
RefseqXP_013740167.11e-48PREDICTED: transcription factor PRE2-like
RefseqXP_013740192.11e-48PREDICTED: transcription factor PRE2
SwissprotQ9LXG54e-48PRE2_ARATH; Transcription factor PRE2
TrEMBLA0A0D3B1801e-48A0A0D3B180_BRAOL; Uncharacterized protein
TrEMBLM4CPZ71e-48M4CPZ7_BRARP; Uncharacterized protein
TrEMBLA0A078C1H81e-48A0A078C1H8_BRANA; BnaA03g05270D protein
STRINGBra006286.1-P3e-48(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25928225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15160.17e-49BANQUO 2